Gene and protein sequence analysis, multiple sequence alignment (MSA), 3D protein structure visualization, and local AI Bio-Agent.
Load and analyze standard FASTA and GenBank sequence files.
Open the Bioinformatics tab, upload FASTA/GenBank files, or paste raw sequences directly. Customize color palettes (Clustal, Zappo, Hydrophobicity).
The system automatically computes % GC-content, molecular weight, isoelectric point (pI), and amino acid frequency statistics.
Compare sequences and identify conserved regions across biological samples.
Upload a multi-FASTA dataset, select the Clustal Omega alignment algorithm, and visualize conservation score metrics.
The alignment viewer highlights mutation sites and strictly conserved sequence regions across species.
Chức năng MSA tự động tính toán điểm Conservation Score và tô màu trực quan các axit amin bảo tồn tuyệt đối để hỗ trợ phát hiện đột biến nhanh chóng.
Detailed explanation of sequence analysis, MSA alignment, and 3D protein structure visualization features:
| UI Element / Button Name | UI Type | Purpose & Operation Details | Recommended Value / Format |
|---|---|---|---|
Upload FASTA / GenBank File | Button | Upload standard nucleotide or protein sequence files. | Supports multi-FASTA format for MSA alignment. |
Color Schemes | Dropdown Selection | Switch between Clustal, Zappo, Hydrophobicity, and Helix Propensity color palettes. | Helps identify physicochemical sequence properties. |
MSA Alignment Engine | select | Select Clustal Omega / MUSCLE algorithm for multiple sequence alignment. | Export alignment data in FASTA/Clustal format. |
3D Protein Viewer (3Dmol) | viewer | Render 3D structures from PDB/CIF files, displaying Cartoon, Ribbon, Surface. | Color by B-factor or pLDDT confidence (AlphaFold). |
Local AI Bio-Agent | bot | Chat with AI regarding gene functions, epitopes, and protein configurations. | Runs locally via WinApp Ollama for strict data privacy. |
Inspect 3D molecular structures from PDB and CIF files.
Enter a PDB ID or upload `.pdb`/`.cif` structure files. Rotate, zoom, and measure inter-atomic distances directly on canvas.
Switch between Ribbon, Cartoon, Surface, or Stick representations. Color by B-factor or pLDDT confidence scores.
High-security biological sequence intelligence powered by local AI execution.
On the Windows Desktop Native App, enable the local Ollama server to interact securely with AI about gene structures, epitopes, and protein functions.